19th May 2017, Melbourne

Sections

Setup

Participants in this workshop will need to download the files listed above, or clone the GitHub repository:

git clone https://github.com/COMBINE-Australia/2017-05-19-bioconductor-melbourne.git

You will also need to install Bioconductor packages:

# Install necessary Bioconductor packages:
source("http://www.bioconductor.org/biocLite.R")
biocLite(c(
# Software packages
    "Biobase",
    "GenomicRanges",
    "Biostrings", 
    "BSgenome", 
    "SummarizedExperiment",
    "AnnotationHub",
    "GEOquery",
    "rtracklayer",
    "seqLogo",
# Annotation packages
    "BSgenome.Scerevisiae.UCSC.sacCer3",
    "TxDb.Scerevisiae.UCSC.sacCer3.sgdGene",
    "TxDb.Hsapiens.UCSC.hg19.knownGene",
    "org.Hs.eg.db",
    "hgu95av2.db",
# Experiment data packages
    "ALL",
    "airway"
))

# And one CRAN package:
install.packages("ggplot2")

Authors

These notes were developed by:

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GitHub repository